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NMR Structure of HSP1-NH2 antimicrobial peptide in presence of SDS-d25 micelles
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 1 mM unlable HSP-1 90% H2O/10% D2O undifined 6.5 1 atm 298 Bruker Bruker Avance III 500 2 2D TOCSY 1 mM unlable HSP-1 90% H2O/10% D2O undifined 6.5 1 atm 298 Bruker Bruker Avance III 500 3 2D 1H-13C HSQC aliphatic 1 mM unlable HSP-1 90% H2O/10% D2O undifined 6.5 1 atm 298 Bruker Bruker Avance III 500
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker Bruker Avance III 500
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 3 chemical shift assignment NMRView Johnson, One Moon Scientific 4 data analysis PROCHECK / PROCHECK-NMR Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton 5 data analysis QUEEN Nabuurs, Spronk, Krieger, Maassen, Vriend and Vuister