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CryoEM structure of the SLC38A9-RagA-RagC-Ragulator complex in the post-GAP state
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.841 f_angle_d 0.44 f_chiral_restr 0.041 f_plane_restr 0.003 f_bond_d 0.002
Sample Complex of pentameric Ragulator, dimeric Rag GTPases and SLC38A9 Sample Components pentameric Ragulator dimeric Rag GTPases SLC38A9
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 106659 Reported Resolution (Å) 3.9 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 60.5
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 3.0.6 IMAGE ACQUISITION SerialEM CTF CORRECTION CTFFIND MODEL FITTING UCSF Chimera RECONSTRUCTION cryoSPARC 2 MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 2309565