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HIV Integrase core domain in complex with inhibitor 2-(5-(3-fluorophenyl)-2-(2-(thiophen-2-yl)ethynyl)-1- benzofuran-3-yl)ethanoic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 2.2 M ammonium sulfate, 100 mM potassium iodide
Crystal Properties Matthews coefficient Solvent content 2.07 40.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.231 α = 90 b = 46.231 β = 90 c = 139.328 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2016-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9527 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 46.44 98.4 0.055 0.057 0.014 1 39.4 16.4 12966 28.07
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.92 75 0.484 0.499 0.121 0.969 6.6 15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.88 43.88 11469 1261 97.05 0.24165 0.23783 0.27817 0.2513 RANDOM 34.843
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.82 -0.82 1.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.981 r_dihedral_angle_3_deg 20.328 r_dihedral_angle_4_deg 20.181 r_long_range_B_other 8.938 r_long_range_B_refined 8.936 r_dihedral_angle_1_deg 8.361 r_scangle_other 3.912 r_mcangle_other 3.605 r_mcangle_it 3.603 r_scbond_it 2.952
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.981 r_dihedral_angle_3_deg 20.328 r_dihedral_angle_4_deg 20.181 r_long_range_B_other 8.938 r_long_range_B_refined 8.936 r_dihedral_angle_1_deg 8.361 r_scangle_other 3.912 r_mcangle_other 3.605 r_mcangle_it 3.603 r_scbond_it 2.952 r_scbond_other 2.443 r_mcbond_it 2.184 r_mcbond_other 2.176 r_angle_refined_deg 2.121 r_angle_other_deg 1.42 r_chiral_restr 0.098 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1065 Nucleic Acid Atoms Solvent Atoms 26 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement Aimless data reduction Aimless data scaling REFMAC phasing