6WAU

Complex structure of PHF19

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4HCZ

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7	277	2.3M ammonium phosphate dibasic and 0.1M Tris pH 8.5

Crystal Properties
Matthews coefficient	Solvent content
2.52	51.25

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 111.477	α = 90
b = 111.477	β = 90
c = 34.409	γ = 120

Symmetry
Space Group	P 32

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RAYONIX MX300HE		2016-05-12	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	CLSI BEAMLINE 08B1-1	0.97951	CLSI	08B1-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.71	55.74	99.4	0.048	0.054	0.023	1	21.6	5.4		51838

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.71	1.74	92.1		1.314	1.608	0.906	0.19		2.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	4HCZ	1.75	48.271	48195	2242	99.921	0.215	0.213	0.2497	26.856

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
3.308			3.308		-6.615

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.667
r_dihedral_angle_4_deg	19.128
r_dihedral_angle_3_deg	15.721
r_dihedral_angle_1_deg	8.526
r_lrange_other	5.611
r_lrange_it	5.61
r_scangle_it	4.463
r_scangle_other	4.463
r_mcangle_it	4.131
r_mcangle_other	4.13
r_scbond_it	3.384
r_scbond_other	3.383
r_mcbond_it	3.216
r_mcbond_other	3.216
r_angle_refined_deg	1.994
r_angle_other_deg	1.289
r_nbd_other	0.202
r_symmetry_nbd_refined	0.195
r_nbd_refined	0.193
r_symmetry_nbd_other	0.189
r_nbtor_refined	0.176
r_xyhbond_nbd_refined	0.143
r_symmetry_xyhbond_nbd_refined	0.133
r_chiral_restr	0.085
r_symmetry_nbtor_other	0.08
r_symmetry_xyhbond_nbd_other	0.046
r_bond_refined_d	0.013
r_gen_planes_refined	0.012
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3031
Nucleic Acid Atoms
Solvent Atoms	36
Heterogen Atoms	11

Software

Software
Software Name	Purpose
Aimless	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing