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Hepatitis C virus polymerase NS5B with RO inhibitor for SAR studies
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GIQ PDB entry 2GIQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 50 mm sodium citrate, pH 4.9, 26% PEG4000, 7.5% glycerol
Crystal Properties Matthews coefficient Solvent content 2.14 42.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.478 α = 90 b = 104.704 β = 90 c = 126.119 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2005-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.000 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 74 0.075 12.1 5.1 61531
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 24.3 0.507 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2GIQ 1.95 45.64 58402 3066 74.06 0.1873 0.1841 0.1904 0.2467 0.2487 RANDOM 44.621
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.17 3.03 -1.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.073 r_dihedral_angle_1_deg 18.851 r_dihedral_angle_3_deg 16.639 r_dihedral_angle_4_deg 15.694 r_angle_refined_deg 1.648 r_angle_other_deg 1.293 r_chiral_restr 0.073 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.073 r_dihedral_angle_1_deg 18.851 r_dihedral_angle_3_deg 16.639 r_dihedral_angle_4_deg 15.694 r_angle_refined_deg 1.648 r_angle_other_deg 1.293 r_chiral_restr 0.073 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8612 Nucleic Acid Atoms Solvent Atoms 404 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PDB_EXTRACT data extraction DENZO data reduction PHASER phasing