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TTLL6 bound to the initiation analog
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4YLR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 290 100 mM Sodium Citrate, pH 6.2, 200 mM MgCl2, 8-12% Peg 20000
Crystal Properties Matthews coefficient Solvent content 3.38 67.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.254 α = 90 b = 110.585 β = 90.139 c = 173.579 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2018-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 19.92 99.67 0.045 0.0643 0.045 0.998 7.35 2 191456 42.75
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.65 99.77 0.3327 0.4706 0.332 0.827 1.97 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4YLR 2.5 19.92 1.24 191455 9423 99.65 0.2184 0.217 0.2161 0.2435 0.2428 63.21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.7082 f_angle_d 0.5159 f_chiral_restr 0.0384 f_plane_restr 0.0028 f_bond_d 0.0016
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12458 Nucleic Acid Atoms Solvent Atoms 294 Heterogen Atoms 352
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing