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Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4I6M experimental model PDB 5TGC
Sample cryo-EM structure of Sth1-Arp7-Arp9-Rtt102
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details 4 second blot time, blot force 20
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 415957 Reported Resolution (Å) 4.2 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (4I6M, 5TGC) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details Initial model docking was done in Chimera. Sth1-Arp7-Arp9-Rtt102 were refined in Rosetta and the top ten models were deposited.
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 53
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) 1200 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 36000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Appion 3.3 IMAGE ACQUISITION Leginon 3.3 CTF CORRECTION CTFFIND 4 MODEL FITTING UCSF Chimera RECONSTRUCTION RELION 3 MODEL REFINEMENT Rosetta MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1986341