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HIV Integrase core domain in complex with inhibitor (5-methyl-1-benzofuran-3-yl)acetic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 2.2 M ammonium sulfate, 100 mM potassium iodide
Crystal Properties Matthews coefficient Solvent content 2.1 41.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.288 α = 90 b = 46.288 β = 90 c = 140.096 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2014-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 46.16 99.9 0.078 0.084 0.03 0.997 16.9 7.9 6539 33.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.38 2.47 99.6 0.425 0.454 0.158 0.947 4.7 7.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.4 43.95 5603 768 97.88 0.22577 0.21635 0.2949 0.2833 RANDOM 38.075
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.94 -0.94 1.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.919 r_dihedral_angle_4_deg 28.889 r_dihedral_angle_3_deg 19.402 r_dihedral_angle_1_deg 8.463 r_long_range_B_refined 7.43 r_long_range_B_other 7.428 r_scangle_other 3.975 r_mcangle_it 3.478 r_mcangle_other 3.476 r_scbond_it 2.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.919 r_dihedral_angle_4_deg 28.889 r_dihedral_angle_3_deg 19.402 r_dihedral_angle_1_deg 8.463 r_long_range_B_refined 7.43 r_long_range_B_other 7.428 r_scangle_other 3.975 r_mcangle_it 3.478 r_mcangle_other 3.476 r_scbond_it 2.51 r_scbond_other 2.375 r_mcbond_it 2.118 r_mcbond_other 2.117 r_angle_refined_deg 1.957 r_angle_other_deg 1.324 r_chiral_restr 0.121 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1085 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement Aimless data reduction Aimless data scaling REFMAC phasing