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Crystal Structure of Human P450 2C9*2 Genetic Variant in Complex with Losartan
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OG2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 0.1M Lithium sulfate monohydrate, 0.1M Sodium citrate tribasic dehydrate pH 5.5, 20% w/v Polyethylene glycol 1000
Crystal Properties Matthews coefficient Solvent content 4.26 71.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 238.1 α = 90 b = 238.1 β = 90 c = 109.851 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.9 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.12 50.01 99.3 0.367 0.127 8.1 8.1 122890
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.12 3.29 99.8 1.2 2.5 8.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1OG 3.12 50.01 116701 6047 99.23 0.1588 0.1556 0.1809 0.2211 0.2209 RANDOM 79.914
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 0.42 0.83 -2.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.156 r_dihedral_angle_3_deg 20.147 r_dihedral_angle_4_deg 19.655 r_dihedral_angle_1_deg 7.643 r_angle_refined_deg 1.856 r_angle_other_deg 1.222 r_chiral_restr 0.105 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.156 r_dihedral_angle_3_deg 20.147 r_dihedral_angle_4_deg 19.655 r_dihedral_angle_1_deg 7.643 r_angle_refined_deg 1.856 r_angle_other_deg 1.222 r_chiral_restr 0.105 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.004 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 28768 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 871
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data processing BALBES phasing Coot model building iMOSFLM data reduction