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Metal-bound C-terminal domain of CzcD transporter from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2 M ammonium acetate, 0.1 M Bis-Tris pH 7.2, 30% (w/v) PEG 3350, 1.0 mM ZnCl2
Crystal Properties Matthews coefficient Solvent content 2.11 41.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.916 α = 90 b = 58.247 β = 90 c = 72.014 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 1.2652 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.29 45.29 99.3 0.998 10.2 25.6 7349
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.29 2.37 0.881
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 45.29 6639 661 99.16 0.24102 0.23821 0.2409 0.27137 0.2761 RANDOM 34.155
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -18.43 -10.58 29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.587 r_dihedral_angle_3_deg 11.126 r_dihedral_angle_4_deg 8.587 r_dihedral_angle_1_deg 5.385 r_long_range_B_refined 3.038 r_long_range_B_other 3.025 r_mcangle_it 1.612 r_mcangle_other 1.612 r_angle_refined_deg 1.154 r_angle_other_deg 1.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.587 r_dihedral_angle_3_deg 11.126 r_dihedral_angle_4_deg 8.587 r_dihedral_angle_1_deg 5.385 r_long_range_B_refined 3.038 r_long_range_B_other 3.025 r_mcangle_it 1.612 r_mcangle_other 1.612 r_angle_refined_deg 1.154 r_angle_other_deg 1.071 r_scangle_other 1.049 r_mcbond_it 0.875 r_mcbond_other 0.875 r_scbond_it 0.555 r_scbond_other 0.555 r_chiral_restr 0.033 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1225 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 5
Software Software Software Name Purpose XDS data reduction Aimless data scaling PHASER phasing REFMAC refinement