☰ Navigation Tabs
Solution Structure of the Tau pre-mRNA Exon 10 Splicing Regulatory Element Bound to MQC
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 D2O 2D 1H-1H NOESY 0.4 mM WT Tau RNA, 0.6 mM MQC, 10 mM KH2PO4/K2HPO4, 0.05 mM EDTA 100% D2O 10 mM 6.0 1 atm 308 Bruker AVANCE III 700 3 D2O 2D DQF-COSY 0.4 mM WT Tau RNA, 0.6 mM MQC, 10 mM KH2PO4/K2HPO4, 0.05 mM EDTA 100% D2O 10 mM 6.0 1 atm 308 Bruker AVANCE III 700 2 H2O 2D 1H-1H NOESY 0.4 mM WT Tau RNA, 0.6 mM MQC, 10 mM KH2PO4/K2HPO4, 0.05 mM EDTA 95% H2O/5% D2O 10 mM 6.0 1 atm 278 Bruker AVANCE III 850
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 700 2 Bruker AVANCE III 850
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 60 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 processing TopSpin Bruker Biospin 2 chemical shift assignment Sparky Goddard 3 refinement Amber 14 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman 5 structure calculation Amber 14 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman