6V5D
EROS3 RDC and NOE Derived Ubiquitin Ensemble
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.9 mM [U-100% 13C; U-100% 15N] Ubiquitin | 90% H2O/10% D2O | 50 mM | 6.5 | 1 atm | 308 | Bruker AVANCE DRX 600 |
2 | 2D 1H-15N HSQC | 0.9 mM [U-100% 13C; U-100% 15N] Ubiquitin | 90% H2O/10% D2O | 50 mM | 6.5 | 1 atm | 308 | Bruker AVANCE DRX 700 |
3 | 2D 1H-15N HSQC | 0.9 mM [U-100% 13C; U-100% 15N] Ubiquitin | 90% H2O/10% D2O | 50 mM | 6.5 | 1 atm | 308 | Bruker AVANCE DRX 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE DRX | 600 |
2 | Bruker | AVANCE DRX | 700 |
3 | Bruker | AVANCE DRX | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | GROMACS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 800 |
Conformers Submitted Total Number | 176 |
Representative Model | 1 (first structure) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
2 | chemical shift assignment | CYANA | Guntert, Mumenthaler and Wuthrich | |
1 | refinement | GROMACS | Lindahl, van der Spoel, Hess, Abraham |