☰ Navigation Tabs
The crystal structure of hemagglutinin from A/duck/Memphis/546/1974 (H11N9)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4F23
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 293 0.1M MOPS, pH7.0, 18% (w/v) PEG 4000
Crystal Properties Matthews coefficient Solvent content 3.08 60.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.12 α = 90 b = 121.149 β = 90 c = 217.733 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2014-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 93.1 0.122 25.8 8.1 45007
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 0.55
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4F23 2.8 49.21 45007 2370 89.29 0.2362 0.234 0.2348 0.2776 0.2749 RANDOM 62.558
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.27 1.16 1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.687 r_dihedral_angle_4_deg 21.274 r_dihedral_angle_3_deg 19.358 r_dihedral_angle_1_deg 8.212 r_angle_refined_deg 1.811 r_angle_other_deg 1.324 r_chiral_restr 0.076 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.687 r_dihedral_angle_4_deg 21.274 r_dihedral_angle_3_deg 19.358 r_dihedral_angle_1_deg 8.212 r_angle_refined_deg 1.811 r_angle_other_deg 1.324 r_chiral_restr 0.076 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11628 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 84
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction PHASER phasing