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Isavuconazole bound complex of Acanthamoeba castellanii CYP51
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6Q2C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 296 0.1 M tri-sodium citrate, pH 5.6; 12% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.92 57.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.45 α = 92.61 b = 99.06 β = 96.2 c = 108.71 γ = 120.09
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS3 S 6M mirrors 2019-10-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1159 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.93 107.35 97.9 0.193 0.229 0.993 5.33 3.397 74605 83.087
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.93 3.01 97.9 3.427 4.061 0.13 0.3 3.449
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6Q2C 2.93 107.35 67944 3621 93.96 0.2176 0.2128 0.2165 0.3081 0.3074 RANDOM 98.861
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 0.81 0.36 -2.84 -0.57 3.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.791 r_dihedral_angle_3_deg 19.474 r_dihedral_angle_4_deg 15.134 r_dihedral_angle_1_deg 8.334 r_angle_refined_deg 1.643 r_angle_other_deg 1.065 r_chiral_restr 0.09 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_gen_planes_other 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.791 r_dihedral_angle_3_deg 19.474 r_dihedral_angle_4_deg 15.134 r_dihedral_angle_1_deg 8.334 r_angle_refined_deg 1.643 r_angle_other_deg 1.065 r_chiral_restr 0.09 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19552 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 446
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing