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BACE-1 in complex with compound #32
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6BFE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 100mM Sodium Cacodylate pH 7.4, 12% PEG 8K, 200mM Ammonium Sulfate
Crystal Properties Matthews coefficient Solvent content 2.6 52.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.807 α = 90 b = 86.465 β = 100.99 c = 109.378 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2011-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97931 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.29 99.99 97.9 0.086 8.3 3.7 246521
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.29 1.36 96.6 0.568 2.3 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 6BFE 1.29 30 232988 12166 97.69 0.1353 0.1343 0.1432 0.1546 0.1451 RANDOM 16.661
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 0.21 -0.61 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.554 r_dihedral_angle_4_deg 17.395 r_sphericity_free 16.554 r_sphericity_bonded 11.177 r_dihedral_angle_3_deg 10.987 r_dihedral_angle_1_deg 7.062 r_rigid_bond_restr 1.519 r_angle_refined_deg 1.256 r_chiral_restr 0.09 r_gen_planes_refined 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.554 r_dihedral_angle_4_deg 17.395 r_sphericity_free 16.554 r_sphericity_bonded 11.177 r_dihedral_angle_3_deg 10.987 r_dihedral_angle_1_deg 7.062 r_rigid_bond_restr 1.519 r_angle_refined_deg 1.256 r_chiral_restr 0.09 r_gen_planes_refined 0.007 r_bond_refined_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6119 Nucleic Acid Atoms Solvent Atoms 1030 Heterogen Atoms 110
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling REFMAC phasing