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BACE-1 in complex with compound #18
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6BFE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 100mM Sodium Cacodylate pH 7.4, 12% PEG 8K, 200mM Ammonium Sulfate
Crystal Properties Matthews coefficient Solvent content 2.61 52.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.507 α = 90 b = 90.134 β = 90 c = 131.306 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2010-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97929 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 99.99 99.9 0.115 9.5 7.4 111291
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.8 0.565 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 6BFE 1.71 30 110149 1025 99.9 0.1402 0.1399 0.1502 0.1779 0.179 RANDOM 20.499
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.46 2.1 -0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.442 r_sphericity_free 22.087 r_dihedral_angle_4_deg 16.721 r_dihedral_angle_3_deg 11.641 r_sphericity_bonded 11.309 r_dihedral_angle_1_deg 7.129 r_rigid_bond_restr 1.999 r_angle_refined_deg 1.277 r_chiral_restr 0.094 r_bond_refined_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.442 r_sphericity_free 22.087 r_dihedral_angle_4_deg 16.721 r_dihedral_angle_3_deg 11.641 r_sphericity_bonded 11.309 r_dihedral_angle_1_deg 7.129 r_rigid_bond_restr 1.999 r_angle_refined_deg 1.277 r_chiral_restr 0.094 r_bond_refined_d 0.007 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6074 Nucleic Acid Atoms Solvent Atoms 1153 Heterogen Atoms 103
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling REFMAC phasing