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C3 symmetric peptide design number 1, Sporty, crystal form 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.09 M sodium nitrate, 0.09 M Sodium phosphate dibasic, 0.09 M ammonium sulfate, 0.1 M HEPES, 0.1M MOPS pH 7.5, 12.5% v/v MPD, 12.5% PEG 1000, 12.5% PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.78 31.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.53 α = 109.499 b = 29.96 β = 108.863 c = 30.1 γ = 107.911
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 24.992 88.9 0.052 0.062 0.999 6.92 3.511 28588 9.781
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.13 68.4 0.156 0.19 0.992 3.58 3.122
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE 1.1 24.992 28587 2859 89.393 0.183 0.1801 0.1805 0.2137 0.215 8.572
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.069 -0.348 0.024 -0.309 0.049 0.267
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.413 r_dihedral_angle_4_deg 11.919 r_dihedral_angle_3_deg 11.25 r_dihedral_angle_1_deg 5.643 r_scangle_it 2.875 r_scangle_other 2.872 r_scbond_it 2.002 r_scbond_other 1.999 r_lrange_it 1.892 r_lrange_other 1.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.413 r_dihedral_angle_4_deg 11.919 r_dihedral_angle_3_deg 11.25 r_dihedral_angle_1_deg 5.643 r_scangle_it 2.875 r_scangle_other 2.872 r_scbond_it 2.002 r_scbond_other 1.999 r_lrange_it 1.892 r_lrange_other 1.75 r_angle_refined_deg 1.685 r_rigid_bond_restr 1.218 r_mcangle_it 0.586 r_mcangle_other 0.585 r_angle_other_deg 0.543 r_mcbond_it 0.511 r_mcbond_other 0.504 r_metal_ion_refined 0.407 r_nbd_refined 0.289 r_symmetry_nbd_other 0.21 r_ncsr_local_group_2 0.189 r_xyhbond_nbd_refined 0.183 r_ncsr_local_group_6 0.175 r_ncsr_local_group_4 0.165 r_nbtor_refined 0.161 r_symmetry_nbd_refined 0.153 r_symmetry_xyhbond_nbd_refined 0.15 r_ncsr_local_group_1 0.142 r_ncsr_local_group_3 0.141 r_nbd_other 0.11 r_chiral_restr 0.097 r_symmetry_nbtor_other 0.078 r_gen_planes_refined 0.012 r_bond_refined_d 0.01 r_ncsr_local_group_5 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 396 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms 105
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction SHELXD phasing