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C2 symmetric peptide design number 1, Zappy, crystal form 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 2.4 M ammonium sulfate, 0.1 M citric acid, pH 5
Crystal Properties Matthews coefficient Solvent content 1.38 11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 8.7 α = 90 b = 23.87 β = 90 c = 27.18 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 17.94 80.7 0.054 0.056 0.999 29.89 11.134 2079 8.975
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.13 25.6 0.122 0.128 0.996 16.02 12.267
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE 1.101 17.935 2058 206 80.769 0.067 0.0656 0.0657 0.0769 0.0771 5.109
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.059 0.064 -0.123
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 7.824 r_dihedral_angle_1_deg 6.417 r_angle_refined_deg 1.777 r_lrange_it 0.823 r_lrange_other 0.82 r_scangle_it 0.806 r_rigid_bond_restr 0.799 r_scangle_other 0.798 r_scbond_it 0.69 r_scbond_other 0.682
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 7.824 r_dihedral_angle_1_deg 6.417 r_angle_refined_deg 1.777 r_lrange_it 0.823 r_lrange_other 0.82 r_scangle_it 0.806 r_rigid_bond_restr 0.799 r_scangle_other 0.798 r_scbond_it 0.69 r_scbond_other 0.682 r_angle_other_deg 0.481 r_mcangle_it 0.448 r_mcangle_other 0.448 r_mcbond_it 0.352 r_mcbond_other 0.324 r_nbd_refined 0.24 r_symmetry_nbd_other 0.212 r_nbtor_refined 0.168 r_symmetry_xyhbond_nbd_refined 0.125 r_xyhbond_nbd_refined 0.099 r_nbd_other 0.086 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.082 r_symmetry_nbd_refined 0.054 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 70 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction SHELXD phasing