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S4 symmetric peptide design number 1, Tim apo form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 3.15 M ammonium sulfate, 0.1 M citric acid, pH 5
Crystal Properties Matthews coefficient Solvent content 1.64 25.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.77 α = 90 b = 28.35 β = 90 c = 12.22 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 19.838 99.7 0.094 0.099 0.994 13.01 10.311 4233 15.47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.13 98.4 0.511 0.551 0.912 3.83 7.19
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE 1.1 19.838 4233 424 99.647 0.132 0.128 0.1281 0.1734 0.1729 16.929
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.214 -0.021 -0.193
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.051 r_dihedral_angle_3_deg 20.887 r_lrange_it 6.851 r_scangle_it 5.627 r_scangle_other 5.062 r_lrange_other 5.026 r_dihedral_angle_1_deg 4.809 r_scbond_it 4.291 r_rigid_bond_restr 4.235 r_scbond_other 4.035
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.051 r_dihedral_angle_3_deg 20.887 r_lrange_it 6.851 r_scangle_it 5.627 r_scangle_other 5.062 r_lrange_other 5.026 r_dihedral_angle_1_deg 4.809 r_scbond_it 4.291 r_rigid_bond_restr 4.235 r_scbond_other 4.035 r_dihedral_angle_other_2_deg 3.789 r_angle_refined_deg 1.994 r_mcangle_it 1.809 r_mcangle_other 1.798 r_dihedral_angle_other_1_deg 1.713 r_mcbond_it 1.363 r_mcbond_other 1.361 r_angle_other_deg 0.767 r_symmetry_nbd_refined 0.62 r_nbd_other 0.314 r_nbd_refined 0.254 r_symmetry_nbd_other 0.254 r_symmetry_xyhbond_nbd_refined 0.216 r_nbtor_refined 0.207 r_chiral_restr 0.152 r_xyhbond_nbd_refined 0.148 r_symmetry_nbtor_other 0.136 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_symmetry_xyhbond_nbd_other 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 102 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PDB_EXTRACT data extraction SHELXD phasing