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Fluorogen Activating Protein Dib1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QWD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 293 0.1M Na citrate pH 5.0, 30% PEG 550MME, 0.2M NaSCN
Crystal Properties Matthews coefficient Solvent content 1.97 37.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.843 α = 90 b = 44.843 β = 90 c = 158.235 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2019-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 50 99 0.051 0.054 0.02 11.4 7.6 42279
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.64 97.9 0.469 0.504 0.183 0.893 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1QWD 1.58 31.73 40941 1317 99.09 0.1644 0.1632 0.1758 0.2025 0.211 RANDOM 20.032
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 -0.59 1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.261 r_dihedral_angle_4_deg 18.317 r_dihedral_angle_3_deg 14.329 r_dihedral_angle_1_deg 6.718 r_angle_refined_deg 2.394 r_angle_other_deg 0.973 r_chiral_restr 0.211 r_bond_refined_d 0.023 r_gen_planes_refined 0.013 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.261 r_dihedral_angle_4_deg 18.317 r_dihedral_angle_3_deg 14.329 r_dihedral_angle_1_deg 6.718 r_angle_refined_deg 2.394 r_angle_other_deg 0.973 r_chiral_restr 0.211 r_bond_refined_d 0.023 r_gen_planes_refined 0.013 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2558 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms 109
Software Software Software Name Purpose HKL-2000 data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction SERGUI data collection HKL-2000 data reduction