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Crystal structure of a GH128 (subgroup III) curdlan-specific exo-beta-1,3-glucanase from Blastomyces gilchristii (BgGH128_III)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6UAQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.05 M Potassium di-hydrogen phosphate
20% Polyethylene glycol 8,000
Crystal Properties Matthews coefficient Solvent content 1.74 29.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.47 α = 102.61 b = 48.72 β = 89.78 c = 57.11 γ = 93.89
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.458810 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 47.43 98.1 0.986 13.25 4.48 34823
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 0.904 4.29
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6UAQ 1.8 47.43 33080 1742 98.1 0.1733 0.1713 0.181 0.2107 0.2186 RANDOM 19.227
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.31 -0.33 0.29 0.37 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.668 r_dihedral_angle_4_deg 21.338 r_dihedral_angle_3_deg 13.084 r_dihedral_angle_1_deg 7.395 r_angle_refined_deg 1.893 r_angle_other_deg 1.521 r_chiral_restr 0.098 r_bond_refined_d 0.015 r_gen_planes_refined 0.014 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.668 r_dihedral_angle_4_deg 21.338 r_dihedral_angle_3_deg 13.084 r_dihedral_angle_1_deg 7.395 r_angle_refined_deg 1.893 r_angle_other_deg 1.521 r_chiral_restr 0.098 r_bond_refined_d 0.015 r_gen_planes_refined 0.014 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3667 Nucleic Acid Atoms Solvent Atoms 326 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHASER phasing