☰ Navigation Tabs
Crystal structure of a GH128 (subgroup I) endo-beta-1,3-glucanase from Amycolatopsis mediterranei (AmGH128_I)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 291 sodium acetate 0.1 M
sodium chloride 1.5 M
Crystal Properties Matthews coefficient Solvent content 2.59 52.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.35 α = 90 b = 78.643 β = 101.62 c = 46.183 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2016-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.033140 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 45.28 94 0.998 11.51 2.35 171671
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.22 0.808
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 1.15 45.28 86795 4403 98.76 0.1506 0.15 0.15 0.1618 0.162 RANDOM 12.728
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.56 0.42 -0.58 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.694 r_dihedral_angle_4_deg 11.925 r_dihedral_angle_3_deg 10.279 r_dihedral_angle_1_deg 6.98 r_mcangle_it 4.221 r_mcbond_it 3.668 r_mcbond_other 3.251 r_angle_other_deg 2.44 r_angle_refined_deg 2.097 r_chiral_restr 0.132
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.694 r_dihedral_angle_4_deg 11.925 r_dihedral_angle_3_deg 10.279 r_dihedral_angle_1_deg 6.98 r_mcangle_it 4.221 r_mcbond_it 3.668 r_mcbond_other 3.251 r_angle_other_deg 2.44 r_angle_refined_deg 2.097 r_chiral_restr 0.132 r_bond_other_d 0.036 r_gen_planes_other 0.022 r_bond_refined_d 0.018 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1813 Nucleic Acid Atoms Solvent Atoms 355 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling SHELXDE phasing