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Plasmodium vivax N-myristoyltransferase with bound indazole inhibitor IMP-923
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 0.2 M AS, 25% PEG 3350, 0.1 M Bis-Tris
Crystal Properties Matthews coefficient Solvent content 2.22 44.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.608 α = 90 b = 121.785 β = 90 c = 178.831 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2013-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50.381 100 0.125 9.8 6.6 139024
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 100 0.817 2 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.7 50.381 138925 6960 99.94 0.17 0.1682 0.1682 0.2085 0.2085 16.734
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.138 -0.038 0.176
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.139 r_dihedral_angle_4_deg 14.84 r_dihedral_angle_3_deg 14.344 r_dihedral_angle_1_deg 6.289 r_lrange_it 4.578 r_scangle_it 2.742 r_mcangle_it 2.022 r_scbond_it 1.856 r_angle_refined_deg 1.636 r_mcbond_it 1.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.139 r_dihedral_angle_4_deg 14.84 r_dihedral_angle_3_deg 14.344 r_dihedral_angle_1_deg 6.289 r_lrange_it 4.578 r_scangle_it 2.742 r_mcangle_it 2.022 r_scbond_it 1.856 r_angle_refined_deg 1.636 r_mcbond_it 1.312 r_nbtor_refined 0.315 r_nbd_refined 0.212 r_symmetry_nbd_refined 0.189 r_symmetry_xyhbond_nbd_refined 0.153 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.118 r_bond_refined_d 0.011 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9400 Nucleic Acid Atoms Solvent Atoms 1615 Heterogen Atoms 303
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing