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Crystal structure of the haemagglutinin mutant (Gln226Leu) from an H10N7 seal influenza virus isolated in Germany in complex with avian receptor analogue 3'-SLN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4D00
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 4% PEG3350, 0.1M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 3.3 62.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.34 α = 90 b = 218.36 β = 92.39 c = 73.06 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 67.28 99.6 0.998 11.3 3.1 164307
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 0.487 1.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4D00 1.9 51.54 164127 8211 99.49 0.2308 0.2298 0.2318 0.2499 0.2507 RANDOM 25.3609
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.7 -0.56 -1.71 1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.844 r_dihedral_angle_3_deg 12.563 r_dihedral_angle_4_deg 9.791 r_dihedral_angle_1_deg 5.483 r_angle_other_deg 3.813 r_angle_refined_deg 1.078 r_mcangle_it 0.782 r_mcbond_it 0.428 r_mcbond_other 0.428 r_chiral_restr 0.061
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.844 r_dihedral_angle_3_deg 12.563 r_dihedral_angle_4_deg 9.791 r_dihedral_angle_1_deg 5.483 r_angle_other_deg 3.813 r_angle_refined_deg 1.078 r_mcangle_it 0.782 r_mcbond_it 0.428 r_mcbond_other 0.428 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_gen_planes_other 0.003 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11484 Nucleic Acid Atoms Solvent Atoms 1153 Heterogen Atoms 219
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction Aimless data scaling PHASER phasing