☰ Navigation Tabs
Crystal structure of the haemagglutinin mutant (Gln226Leu) from an H10N7 seal influenza virus isolated in Germany
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4D00
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 4% PEG3350, 0.1M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 3.5 64.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.354 α = 90 b = 214.102 β = 102.06 c = 157.165 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9794 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.63 72.33 100 0.981 6.3 5.7 132596
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.63 2.67 0.82
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4D00 2.63 72.33 132557 6486 99.98 0.2419 0.2407 0.2391 0.2636 0.2617 RANDOM 76.8288
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.16 0.16 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.208 r_dihedral_angle_3_deg 16.495 r_dihedral_angle_4_deg 13.961 r_dihedral_angle_1_deg 6.165 r_mcangle_it 5.595 r_angle_other_deg 4.233 r_mcbond_it 3.445 r_mcbond_other 3.445 r_angle_refined_deg 1.785 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.208 r_dihedral_angle_3_deg 16.495 r_dihedral_angle_4_deg 13.961 r_dihedral_angle_1_deg 6.165 r_mcangle_it 5.595 r_angle_other_deg 4.233 r_mcbond_it 3.445 r_mcbond_other 3.445 r_angle_refined_deg 1.785 r_chiral_restr 0.086 r_bond_refined_d 0.013 r_gen_planes_other 0.005 r_gen_planes_refined 0.004 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22943 Nucleic Acid Atoms Solvent Atoms 339 Heterogen Atoms 134
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DIALS data reduction Aimless data scaling PHASER phasing