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Structure of Mycobacterium smegmatis alpha-maltose-1-phosphate synthase GlgM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 25% (w/v) PEG 3350, 0.2 M malonate and 100 mM Bis-Tris Propane, pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.62 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.371 α = 90 b = 144.928 β = 90 c = 46.468 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-09-19 M SINGLE WAVELENGTH 2 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04 2 SYNCHROTRON DIAMOND BEAMLINE I03 1.0052 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 72.46 96.3 0.088 0.092 1 18.8 13.3 73208 31.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 95.8 2.102 2.187 0.52 1.4 13.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 72.46 69344 3792 99.97 0.1751 0.1731 0.1812 0.2117 0.221 RANDOM 39.312
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.44 1.72 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.242 r_dihedral_angle_4_deg 19.859 r_dihedral_angle_3_deg 12.321 r_dihedral_angle_1_deg 6.186 r_angle_refined_deg 1.581 r_angle_other_deg 1.406 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.242 r_dihedral_angle_4_deg 19.859 r_dihedral_angle_3_deg 12.321 r_dihedral_angle_1_deg 6.186 r_angle_refined_deg 1.581 r_angle_other_deg 1.406 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5806 Nucleic Acid Atoms Solvent Atoms 452 Heterogen Atoms 2
Software Software Software Name Purpose XDS data reduction REFMAC refinement PDB_EXTRACT data extraction Aimless data scaling CRANK2 phasing