X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6R8P 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.23001.5 M Ammonium Sulphate 0.1 M Sodium citrate pH 4.2
Crystal Properties
Matthews coefficientSolvent content
1.9336.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.987α = 90
b = 71.574β = 90
c = 78.313γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2016-12-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.96859DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5352.8399.40.9914.312.751294
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.531.560.48

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6R8P1.5352.8348397248898.630.17250.17040.2142RANDOM22.657
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.180.33-0.51
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.791
r_dihedral_angle_4_deg16.918
r_dihedral_angle_3_deg12.055
r_dihedral_angle_1_deg6.52
r_angle_other_deg1.273
r_angle_refined_deg1.233
r_rigid_bond_restr0.835
r_chiral_restr0.067
r_gen_planes_refined0.005
r_bond_refined_d0.004
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.791
r_dihedral_angle_4_deg16.918
r_dihedral_angle_3_deg12.055
r_dihedral_angle_1_deg6.52
r_angle_other_deg1.273
r_angle_refined_deg1.233
r_rigid_bond_restr0.835
r_chiral_restr0.067
r_gen_planes_refined0.005
r_bond_refined_d0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2801
Nucleic Acid Atoms
Solvent Atoms114
Heterogen Atoms189

Software

Software
Software NamePurpose
xia2data scaling
REFMACrefinement
PDB_EXTRACTdata extraction
xia2data reduction
MOLREPphasing