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Ovine ATP synthase 1a state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ARA
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.059 f_angle_d 1.209 f_chiral_restr 0.065 f_bond_d 0.008 f_plane_restr 0.008
Sample Purified ATP synthase from sheep heart mitochondria
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 35000 Reported Resolution (Å) 3.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (5ARA) 2 (5ARA) Refinement Space REAL REAL Refinement Protocol AB INITIO MODEL AB INITIO MODEL Refinement Target Overall B Value 96 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 106
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification 131951 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Gautomatch 0.56 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4.1.13 MODEL FITTING Coot 0.8.9 INITIAL EULER ASSIGNMENT RELION 3.0 FINAL EULER ASSIGNMENT RELION 3.0 CLASSIFICATION RELION 3.0 RECONSTRUCTION RELION 3.0 MODEL REFINEMENT PHENIX 1.12_2829 MODEL FITTING Coot 0.8.9 MODEL REFINEMENT PHENIX 1.12_2829
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 809000