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N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 1-((1-acetylpiperidin-4-yl)methyl)-2-(4-hydroxy-3,5-dimethylphenyl)-N-methyl-1H-benzo[d]imidazole-5-carboxamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other non published structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 20% PEG6000, 0.2M NH4Cl, 0.1M tris pH8
Crystal Properties Matthews coefficient Solvent content 1.9 35.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.868 α = 90 b = 48.684 β = 90 c = 57.629 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2011-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 57.63 95.6 0.025 28 5.7 19018
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.53 0.128 7.2 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE non published structure 1.48 37.218 18971 978 95.471 0.156 0.1552 0.1645 0.1814 0.1893 19.439
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.047 0.195 -1.242
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.14 r_dihedral_angle_3_deg 12.753 r_dihedral_angle_4_deg 12.108 r_dihedral_angle_1_deg 5.76 r_lrange_it 5.166 r_lrange_other 5.164 r_scangle_it 2.319 r_scangle_other 2.318 r_mcangle_it 1.618 r_mcangle_other 1.618
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.14 r_dihedral_angle_3_deg 12.753 r_dihedral_angle_4_deg 12.108 r_dihedral_angle_1_deg 5.76 r_lrange_it 5.166 r_lrange_other 5.164 r_scangle_it 2.319 r_scangle_other 2.318 r_mcangle_it 1.618 r_mcangle_other 1.618 r_scbond_it 1.398 r_scbond_other 1.397 r_angle_other_deg 1.283 r_angle_refined_deg 1.222 r_mcbond_it 0.949 r_mcbond_other 0.947 r_nbd_refined 0.203 r_nbd_other 0.189 r_nbtor_refined 0.175 r_symmetry_nbd_other 0.16 r_symmetry_nbd_refined 0.124 r_xyhbond_nbd_refined 0.106 r_symmetry_xyhbond_nbd_refined 0.106 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.065 r_gen_planes_refined 0.006 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1061 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement XDS data reduction