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X-RAY STRUCTURE OF MPS1 IN COMPLEX WITH COMPOUND 16
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other IN HOUSE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 25% GLYCEROL, 1.2 M AS, 0.1 M
Crystal Properties Matthews coefficient Solvent content 3.22 61.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.351 α = 90 b = 112.691 β = 90 c = 70.67 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2008-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 78.57 75.9 0.04 29 4.4 10410 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 17.1 0.36 1.5 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT IN HOUSE 2.6 78.48 9893 500 75.7 0.2199 0.2176 0.223 0.2647 0.2531 RANDOM 105.192
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 4.47 -4.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.576 r_dihedral_angle_4_deg 26.712 r_dihedral_angle_3_deg 17.619 r_dihedral_angle_1_deg 8.095 r_angle_refined_deg 1.548 r_angle_other_deg 1.017 r_chiral_restr 0.101 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.576 r_dihedral_angle_4_deg 26.712 r_dihedral_angle_3_deg 17.619 r_dihedral_angle_1_deg 8.095 r_angle_refined_deg 1.548 r_angle_other_deg 1.017 r_chiral_restr 0.101 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2097 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SCALA data scaling MOLREP phasing