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Rapid optimisation of fragments and hits to lead compounds from screening of crude reaction mixtures
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 10% PEG3350,
0.1 M sodium cacodylate pH 6.5,
0.2 M MgCl2
Crystal Properties Matthews coefficient Solvent content 2.83 56.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.693 α = 90 b = 89.422 β = 90 c = 99.829 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.274 36.318 95.9 0.042 1 17.6 6.3 60158
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.274 1.387 68.3 0.748 0.739 1.6 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MIR FREE R-VALUE 1.274 36.318 57101 3067 77.635 0.173 0.172 0.172 0.198 0.198 20.296
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.018 -0.016 -0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.186 r_dihedral_angle_4_deg 17.467 r_dihedral_angle_3_deg 11.555 r_lrange_it 6.729 r_dihedral_angle_1_deg 6.468 r_lrange_other 6.408 r_scangle_it 4.775 r_scangle_other 4.773 r_scbond_it 3.304 r_scbond_other 3.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.186 r_dihedral_angle_4_deg 17.467 r_dihedral_angle_3_deg 11.555 r_lrange_it 6.729 r_dihedral_angle_1_deg 6.468 r_lrange_other 6.408 r_scangle_it 4.775 r_scangle_other 4.773 r_scbond_it 3.304 r_scbond_other 3.302 r_mcangle_it 3.158 r_mcangle_other 3.157 r_angle_other_deg 2.408 r_mcbond_it 2.11 r_mcbond_other 2.078 r_angle_refined_deg 1.957 r_symmetry_xyhbond_nbd_refined 0.339 r_symmetry_xyhbond_nbd_other 0.292 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.213 r_symmetry_nbd_other 0.211 r_nbd_other 0.179 r_nbtor_refined 0.173 r_chiral_restr 0.107 r_symmetry_nbtor_other 0.074 r_symmetry_nbd_refined 0.06 r_bond_other_d 0.035 r_bond_refined_d 0.016 r_gen_planes_other 0.012 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1643 Nucleic Acid Atoms Solvent Atoms 370 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling REFMAC phasing