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Rapid optimisation of fragments and hits to lead compounds from screening of crude reaction mixtures
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.8 277 0.1 M Sodium acetate pH 5.8
0.125 M Magnesium chloride
Crystal Properties Matthews coefficient Solvent content 3.23 61.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.051 α = 90 b = 109.051 β = 90 c = 83.945 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.905 94.441 94.3 0.056 1 20.4 10.3 27801
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.905 2.13 1.241 0.713 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MIR FREE R-VALUE 1.905 94.441 27801 1332 62.599 0.178 0.1758 0.1756 0.2213 0.2215 46.489
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.002 0.001 0.002 -0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.233 r_dihedral_angle_4_deg 19.716 r_dihedral_angle_3_deg 16.173 r_lrange_other 8.848 r_lrange_it 8.815 r_scangle_it 6.744 r_scangle_other 6.742 r_dihedral_angle_1_deg 6.435 r_mcangle_it 5.353 r_mcangle_other 5.351
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.233 r_dihedral_angle_4_deg 19.716 r_dihedral_angle_3_deg 16.173 r_lrange_other 8.848 r_lrange_it 8.815 r_scangle_it 6.744 r_scangle_other 6.742 r_dihedral_angle_1_deg 6.435 r_mcangle_it 5.353 r_mcangle_other 5.351 r_scbond_it 4.644 r_scbond_other 4.642 r_mcbond_it 3.797 r_mcbond_other 3.794 r_angle_other_deg 2.377 r_angle_refined_deg 1.538 r_symmetry_nbd_refined 0.271 r_nbd_other 0.219 r_symmetry_nbd_other 0.215 r_nbd_refined 0.213 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.168 r_symmetry_xyhbond_nbd_refined 0.087 r_chiral_restr 0.076 r_symmetry_nbtor_other 0.071 r_bond_other_d 0.035 r_gen_planes_other 0.01 r_bond_refined_d 0.009 r_symmetry_xyhbond_nbd_other 0.009 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2718 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling REFMAC phasing