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Rapid optimisation of fragments and hits to lead compounds from screening of crude reaction mixtures
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.8 277 0.1 M Sodium acetate pH 5.8
0.125 M Magnesium chloride
Crystal Properties Matthews coefficient Solvent content 3.3 62.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.379 α = 90 b = 110.379 β = 90 c = 83.679 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.66 95.591 91.8 0.105 1 17.1 10 10734
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.66 2.92 83.1 1.333 0.633 1.7 10.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MIR FREE R-VALUE 2.71 55.189 10687 556 63.708 0.197 0.1936 0.2619 0.2302 65.226
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.222 -0.111 -0.222 0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.976 r_dihedral_angle_4_deg 23.688 r_dihedral_angle_3_deg 19.628 r_lrange_it 11.83 r_lrange_other 11.829 r_scangle_it 8.871 r_scangle_other 8.869 r_mcangle_it 8.621 r_mcangle_other 8.618 r_dihedral_angle_1_deg 8.054
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.976 r_dihedral_angle_4_deg 23.688 r_dihedral_angle_3_deg 19.628 r_lrange_it 11.83 r_lrange_other 11.829 r_scangle_it 8.871 r_scangle_other 8.869 r_mcangle_it 8.621 r_mcangle_other 8.618 r_dihedral_angle_1_deg 8.054 r_mcbond_other 5.588 r_mcbond_it 5.586 r_scbond_it 5.554 r_scbond_other 5.553 r_angle_other_deg 2.38 r_angle_refined_deg 1.6 r_symmetry_xyhbond_nbd_refined 0.266 r_nbd_refined 0.251 r_symmetry_nbd_other 0.23 r_symmetry_nbd_refined 0.226 r_nbd_other 0.203 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.182 r_xyhbond_nbd_other 0.157 r_symmetry_xyhbond_nbd_other 0.081 r_symmetry_nbtor_other 0.076 r_chiral_restr 0.063 r_bond_other_d 0.034 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2703 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling REFMAC phasing