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BIL2 domain from T.thermophila BUBL1 locus (C1A-N143A)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 293 Mg formate 0.1 M, PEG3350 19%, Tris 50 mM, NaCl 250 mM.
Crystal Properties Matthews coefficient Solvent content 2.35 47.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.477 α = 90 b = 72.769 β = 97.871 c = 70.264 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2019-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.0 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.398 69.602 98.9 0.06 0.071 0.998 12.25 3.36 26317 58.51
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.398 2.54 98.9 0.593 0.704 0.733 1.78 3.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.398 69.602 26159 1333 99.403 0.201 0.1976 0.204 0.2665 0.2648 56.817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.732 -0.362 3.26 -1.376
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.951 r_dihedral_angle_3_deg 16.462 r_dihedral_angle_4_deg 11.459 r_lrange_it 7.766 r_lrange_other 7.741 r_dihedral_angle_1_deg 7.371 r_scangle_it 4.802 r_scangle_other 4.802 r_mcangle_it 4.584 r_mcangle_other 4.583
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.951 r_dihedral_angle_3_deg 16.462 r_dihedral_angle_4_deg 11.459 r_lrange_it 7.766 r_lrange_other 7.741 r_dihedral_angle_1_deg 7.371 r_scangle_it 4.802 r_scangle_other 4.802 r_mcangle_it 4.584 r_mcangle_other 4.583 r_scbond_it 2.871 r_scbond_other 2.871 r_mcbond_it 2.846 r_mcbond_other 2.846 r_angle_refined_deg 1.287 r_angle_other_deg 1.105 r_metal_ion_refined 0.448 r_symmetry_xyhbond_nbd_refined 0.198 r_xyhbond_nbd_refined 0.19 r_nbd_refined 0.189 r_nbd_other 0.187 r_symmetry_nbd_other 0.186 r_symmetry_nbd_refined 0.176 r_symmetry_xyhbond_nbd_other 0.166 r_nbtor_refined 0.156 r_symmetry_nbtor_other 0.07 r_chiral_restr 0.047 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5009 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 45
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction AutoSol phasing