☰ Navigation Tabs
Crystal structure of mouse KANK3 ankyrin repeats
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4HBD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 294 0.2 M ammonium formate, 20% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.19 43.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 149.437 α = 90 b = 45.778 β = 95.06 c = 69.596 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2019-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 69.32 97.4 0.062 0.073 0.039 0.999 10.5 3.5 42604
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 96.7 0.776 0.909 0.472 0.811 1.5 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4hbd 1.8 53.17 40455 2143 97.12 0.2012 0.1994 0.2086 0.2359 0.2419 RANDOM 32.084
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.08 0.78 -1.26 3.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.004 r_dihedral_angle_4_deg 23.351 r_dihedral_angle_3_deg 14.983 r_dihedral_angle_1_deg 5.587 r_angle_refined_deg 1.529 r_angle_other_deg 0.553 r_chiral_restr 0.073 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.004 r_dihedral_angle_4_deg 23.351 r_dihedral_angle_3_deg 14.983 r_dihedral_angle_1_deg 5.587 r_angle_refined_deg 1.529 r_angle_other_deg 0.553 r_chiral_restr 0.073 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3537 Nucleic Acid Atoms Solvent Atoms 370 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling PHASER phasing