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Tankyrase 2 in complex with an inhibitor (OM-2700)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5NOB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295.15 7.5-25% PEG 6000, Bicine pH=9.0
Crystal Properties Matthews coefficient Solvent content 2.21 44.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.12 α = 90 b = 76.84 β = 90 c = 148.8 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97625 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 99.8 0.993 8.37 6.471 17374
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.56 0.895
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5NOB 2.5 41.707 17374 869 99.805 0.202 0.1991 0.1993 0.2516 0.252 32.103
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.291 2.49 -2.782
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.983 r_dihedral_angle_4_deg 16.39 r_dihedral_angle_3_deg 15.661 r_dihedral_angle_1_deg 7.069 r_lrange_it 6.97 r_lrange_other 6.969 r_scangle_it 4.628 r_scangle_other 4.627 r_mcangle_it 4.095 r_mcangle_other 4.094
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.983 r_dihedral_angle_4_deg 16.39 r_dihedral_angle_3_deg 15.661 r_dihedral_angle_1_deg 7.069 r_lrange_it 6.97 r_lrange_other 6.969 r_scangle_it 4.628 r_scangle_other 4.627 r_mcangle_it 4.095 r_mcangle_other 4.094 r_scbond_it 2.803 r_scbond_other 2.802 r_mcbond_it 2.466 r_mcbond_other 2.466 r_angle_refined_deg 1.511 r_angle_other_deg 1.29 r_chiral_restr_other 0.935 r_nbd_refined 0.191 r_symmetry_nbd_other 0.179 r_symmetry_nbd_refined 0.175 r_nbtor_refined 0.166 r_xyhbond_nbd_refined 0.152 r_nbd_other 0.147 r_symmetry_xyhbond_nbd_refined 0.109 r_ncsr_local_group_1 0.095 r_symmetry_nbtor_other 0.074 r_chiral_restr 0.062 r_bond_refined_d 0.008 r_metal_ion_refined 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3278 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing