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Tankyrase 2 in complex with an inhibitor (OM-1900)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5NOB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295.15 7.5-25% PEG 6000, Bicine, pH = 9.0
Crystal Properties Matthews coefficient Solvent content 2.2 44.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.01 α = 90 b = 77.08 β = 90 c = 148.36 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.03285 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.9 0.998 11.03 6.505 19583
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.46 0.801
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5NOB 2.4 41.658 19583 980 99.908 0.207 0.2052 0.2054 0.2457 0.2456 40.297
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.374 3.185 -3.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.13 r_dihedral_angle_3_deg 14.766 r_dihedral_angle_4_deg 13.589 r_dihedral_angle_1_deg 6.751 r_lrange_it 5.308 r_lrange_other 5.306 r_mcangle_it 3.269 r_mcangle_other 3.269 r_scangle_it 3.04 r_scangle_other 3.039
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.13 r_dihedral_angle_3_deg 14.766 r_dihedral_angle_4_deg 13.589 r_dihedral_angle_1_deg 6.751 r_lrange_it 5.308 r_lrange_other 5.306 r_mcangle_it 3.269 r_mcangle_other 3.269 r_scangle_it 3.04 r_scangle_other 3.039 r_mcbond_it 1.85 r_mcbond_other 1.847 r_scbond_it 1.738 r_scbond_other 1.738 r_chiral_restr_other 1.409 r_angle_refined_deg 1.275 r_angle_other_deg 1.211 r_nbd_other 0.172 r_symmetry_nbd_other 0.17 r_nbd_refined 0.167 r_nbtor_refined 0.162 r_symmetry_xyhbond_nbd_refined 0.153 r_symmetry_nbd_refined 0.147 r_xyhbond_nbd_refined 0.119 r_ncsr_local_group_1 0.085 r_symmetry_nbtor_other 0.069 r_chiral_restr 0.044 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3280 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing