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Tankyrase 2 in complex with an inhibitor (OM-1800)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5NOB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295.15 7.5-25% PEG 6000, Bicine, pH = 9.0
Crystal Properties Matthews coefficient Solvent content 2.6 52.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.32 α = 90 b = 77.41 β = 90 c = 148.68 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2018-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.979500 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 98.4 0.974 5.09 3.4339 25517
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.77 0.627 1.21
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5NOB 2.7 29.735 13994 700 99.403 0.239 0.237 0.2371 0.2714 0.2716 37.872
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.141 3.474 -5.615
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.309 r_dihedral_angle_3_deg 15.877 r_dihedral_angle_4_deg 13.564 r_dihedral_angle_1_deg 6.322 r_lrange_it 4.751 r_lrange_other 4.751 r_mcangle_it 2.997 r_mcangle_other 2.997 r_scangle_it 2.34 r_scangle_other 2.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.309 r_dihedral_angle_3_deg 15.877 r_dihedral_angle_4_deg 13.564 r_dihedral_angle_1_deg 6.322 r_lrange_it 4.751 r_lrange_other 4.751 r_mcangle_it 2.997 r_mcangle_other 2.997 r_scangle_it 2.34 r_scangle_other 2.34 r_mcbond_it 1.657 r_mcbond_other 1.657 r_chiral_restr_other 1.501 r_scbond_it 1.297 r_scbond_other 1.297 r_angle_refined_deg 1.275 r_angle_other_deg 1.165 r_nbd_other 0.227 r_symmetry_xyhbond_nbd_refined 0.216 r_symmetry_nbd_refined 0.193 r_nbd_refined 0.172 r_symmetry_nbd_other 0.169 r_nbtor_refined 0.162 r_xyhbond_nbd_refined 0.121 r_ncsr_local_group_1 0.103 r_symmetry_nbtor_other 0.071 r_chiral_restr 0.04 r_symmetry_xyhbond_nbd_other 0.038 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3269 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing