6TG4

Tankyrase 2 in complex with an inhibitor (OM-1700)


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5NOB 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP295.157.5-25% PEG 6000, Bicine, pH = 9.0
Crystal Properties
Matthews coefficientSolvent content
2.2845.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.68α = 90
b = 77.9β = 90
c = 149.52γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2018-04-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID30B0.96770ESRFID30B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.765099.50.9795.336.1616413394
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.762.830.498

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5NOB2.7637.4581339467099.4950.2320.22960.280944.877
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.3912.608-3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.7
r_dihedral_angle_4_deg20.997
r_dihedral_angle_3_deg17.208
r_dihedral_angle_1_deg7.264
r_lrange_it6.565
r_lrange_other6.564
r_scangle_it4.153
r_scangle_other4.152
r_mcangle_it4.099
r_mcangle_other4.099
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.7
r_dihedral_angle_4_deg20.997
r_dihedral_angle_3_deg17.208
r_dihedral_angle_1_deg7.264
r_lrange_it6.565
r_lrange_other6.564
r_scangle_it4.153
r_scangle_other4.152
r_mcangle_it4.099
r_mcangle_other4.099
r_scbond_it2.527
r_scbond_other2.527
r_mcbond_it2.456
r_mcbond_other2.456
r_chiral_restr_other1.524
r_angle_refined_deg1.388
r_angle_other_deg1.207
r_nbd_other0.219
r_nbd_refined0.183
r_symmetry_nbd_other0.179
r_nbtor_refined0.163
r_symmetry_nbd_refined0.136
r_xyhbond_nbd_refined0.129
r_symmetry_xyhbond_nbd_refined0.12
r_ncsr_local_group_10.105
r_symmetry_nbtor_other0.075
r_chiral_restr0.054
r_symmetry_xyhbond_nbd_other0.052
r_bond_refined_d0.005
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3250
Nucleic Acid Atoms
Solvent Atoms35
Heterogen Atoms70

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing