6TCG

2'-F-riboguanosine and 2'-F-arabinoguanosine modified G-quadruplex with V-loop and all-syn G-tract


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY0.4 mM F14A1590% H2O/10% D2O20 mM71 atm298Bruker AVANCE NEO 600
22D 1H-1H NOESY0.4 mM F14A15100% D2O20 mM71 atm298Bruker AVANCE NEO 600
32D DQF-COSY0.4 mM F14A15100% D2O20 mM71 atm298Bruker AVANCE NEO 600
42D 1H-1H TOCSY0.4 mM F14A15100% D2O20 mM71 atm298Bruker AVANCE NEO 600
52D 1H-13C HSQC aromatic0.4 mM F14A1590% H2O/10% D2O20 mM71 atm298Bruker AVANCE NEO 600
62D 19F-1H HOESY0.4 mM F14A1590% H2O/10% D2O20 mM71 atm298Bruker AVANCE NEO 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE NEO600
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted
Conformers Calculated Total Number10
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2processingTopSpinBruker Biospin
3chemical shift assignmentCcpNmr AnalysisCCPN
4structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
5structure calculationAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman