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Crystal structrue of RSL W31A lectin mutant in complex with alpha-methylfucoside
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BT9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.2 293 26% PEG6K, 0.1M glycine, 0.1 M Tris/HCl pH 8.2
Crystal Properties Matthews coefficient Solvent content 1.91 35.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.914 α = 90.04 b = 44.048 β = 91 c = 103.461 γ = 119.67
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 38.27 95.6 0.034 0.034 0.048 0.034 10.9 1.8 112322 112322
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 1.54 92.3 0.183 0.016 0.023 0.016 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BT9 1.46 38.15 106840 5278 95.86 0.1856 0.1843 0.1728 0.2111 0.1942 RANDOM 11.129
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.02 -1.23 -2.91 -2.38 -0.09 4.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.181 r_dihedral_angle_3_deg 9.082 r_dihedral_angle_1_deg 7.592 r_dihedral_angle_4_deg 5.761 r_angle_refined_deg 1.232 r_angle_other_deg 1.226 r_chiral_restr 0.04 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.181 r_dihedral_angle_3_deg 9.082 r_dihedral_angle_1_deg 7.592 r_dihedral_angle_4_deg 5.761 r_angle_refined_deg 1.232 r_angle_other_deg 1.226 r_chiral_restr 0.04 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5923 Nucleic Acid Atoms Solvent Atoms 1273 Heterogen Atoms 256
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction XDS data reduction MOLREP phasing