☰ Navigation Tabs
Crystal structrue of RSL W31FW76F lectin mutant in complex with L-fucose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BT9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.2 293 23% PEG 6000, 0.1M Glycine, 0.1M Tris/HCl, pH 8.2
Crystal Properties Matthews coefficient Solvent content 1.9 35.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.262 α = 116.4 b = 42.105 β = 94.54 c = 44.02 γ = 115.49
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 37.15 96.4 0.053 0.053 0.071 0.048 0.994 8.3 2 14315 14315
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 95.3 0.16 0.047 0.063 0.041 0.933 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BT9 2 37.15 13517 789 96.31 0.1547 0.1522 0.1661 0.1982 0.2142 RANDOM 23.392
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.77 -1.32 -0.94 0.64 0.83 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.801 r_dihedral_angle_3_deg 10.375 r_dihedral_angle_1_deg 7.459 r_dihedral_angle_4_deg 5.174 r_angle_refined_deg 1.309 r_angle_other_deg 1.137 r_chiral_restr 0.038 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.801 r_dihedral_angle_3_deg 10.375 r_dihedral_angle_1_deg 7.459 r_dihedral_angle_4_deg 5.174 r_angle_refined_deg 1.309 r_angle_other_deg 1.137 r_chiral_restr 0.038 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1977 Nucleic Acid Atoms Solvent Atoms 255 Heterogen Atoms 133
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing