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Crystal structrue of RSL W31YW76Y lectin mutant in complex with alpha-methylfucoside
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BT9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.2 293 26% PEG6K, 0.1M Tris/HCl, pH 8.2
Crystal Properties Matthews coefficient Solvent content 2 38.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.602 α = 96.42 b = 44.425 β = 98.7 c = 116.574 γ = 103.36
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 42.72 97.6 0.127 0.971 4.1 1.8 18743
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.83 96.9 0.464 0.649 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BT9 2.7 42.72 17830 898 97.52 0.2219 0.2198 0.2248 0.2648 0.2688 RANDOM 35.682
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.98 3.14 -0.75 0.66 0.59 -3.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.676 r_dihedral_angle_3_deg 14.823 r_dihedral_angle_4_deg 11.81 r_dihedral_angle_1_deg 7.155 r_angle_refined_deg 1.367 r_angle_other_deg 1.207 r_chiral_restr 0.047 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.676 r_dihedral_angle_3_deg 14.823 r_dihedral_angle_4_deg 11.81 r_dihedral_angle_1_deg 7.155 r_angle_refined_deg 1.367 r_angle_other_deg 1.207 r_chiral_restr 0.047 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6008 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms 218
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing