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PII-like protein CutA from Nostoc sp. PCC7120 in complex with MES
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6T76
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 0.1 MES pH 6.5, 1.2 M Potassium/Sodium tartrate
Crystal Properties Matthews coefficient Solvent content 2.38 48.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.073 α = 90 b = 87.073 β = 90 c = 152.994 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 38.25 99.8 0.092 0.999 16.98 8.7 25325
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.51 0.842
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6T76 2.45 38.249 25325 1267 99.783 0.224 0.2215 0.2215 0.2713 0.2719 60.286
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.129 0.564 1.129 -3.661
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.44 r_dihedral_angle_3_deg 15.961 r_dihedral_angle_4_deg 12.932 r_dihedral_angle_1_deg 6.095 r_lrange_it 4.05 r_lrange_other 4.05 r_scangle_it 2.596 r_scangle_other 2.595 r_mcangle_it 1.945 r_mcangle_other 1.944
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.44 r_dihedral_angle_3_deg 15.961 r_dihedral_angle_4_deg 12.932 r_dihedral_angle_1_deg 6.095 r_lrange_it 4.05 r_lrange_other 4.05 r_scangle_it 2.596 r_scangle_other 2.595 r_mcangle_it 1.945 r_mcangle_other 1.944 r_scbond_it 1.622 r_scbond_other 1.622 r_angle_refined_deg 1.243 r_mcbond_it 1.218 r_mcbond_other 1.218 r_angle_other_deg 0.708 r_symmetry_nbd_refined 0.206 r_nbd_refined 0.202 r_nbtor_refined 0.178 r_nbd_other 0.171 r_symmetry_nbd_other 0.167 r_symmetry_xyhbond_nbd_refined 0.145 r_xyhbond_nbd_refined 0.125 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.065 r_symmetry_xyhbond_nbd_other 0.023 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4874 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing