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Crystal structure of Toxoplasma gondii Morn1 (extended conformation).
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6T4D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295.15 0.1 M Tris-HCl pH 8.2, 15% PEG 3350, 0.2 M NaCl
Crystal Properties Matthews coefficient Solvent content 2.56 51.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.916 α = 90 b = 53.916 β = 90 c = 348.849 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.967 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 48.92 99.1 0.14 0.992 11.8 8.4 12331
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.08 2.252 0.772 0.5 8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6T4D 2.902 48.92 12254 593 98.902 0.278 0.2761 0.2763 0.3111 0.3113 86.807
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.455 6.455 -12.911
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.274 r_dihedral_angle_3_deg 17.083 r_dihedral_angle_4_deg 15.388 r_dihedral_angle_1_deg 6.824 r_lrange_it 4.439 r_lrange_other 4.438 r_mcangle_it 2.757 r_mcangle_other 2.757 r_scangle_it 2.6 r_scangle_other 2.599
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.274 r_dihedral_angle_3_deg 17.083 r_dihedral_angle_4_deg 15.388 r_dihedral_angle_1_deg 6.824 r_lrange_it 4.439 r_lrange_other 4.438 r_mcangle_it 2.757 r_mcangle_other 2.757 r_scangle_it 2.6 r_scangle_other 2.599 r_angle_other_deg 2.45 r_mcbond_it 1.61 r_mcbond_other 1.609 r_scbond_it 1.456 r_scbond_other 1.455 r_angle_refined_deg 1.213 r_nbd_other 0.243 r_symmetry_nbd_other 0.204 r_symmetry_nbd_refined 0.202 r_nbd_refined 0.191 r_nbtor_refined 0.173 r_xyhbond_nbd_refined 0.106 r_symmetry_nbtor_other 0.067 r_symmetry_xyhbond_nbd_refined 0.065 r_bond_other_d 0.038 r_chiral_restr 0.038 r_gen_planes_other 0.004 r_gen_planes_refined 0.003 r_bond_refined_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3319 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing