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The unusual structure of Ruminococcin C1 antimicrobial peptide confers activity against clinical pathogens
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 2 2D 1H-13C HSQC 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 6 3D 1H-15N NOESY 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 15 3D 1H-15N TOCSY 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 7 3D HNHA 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 3 3D HNCA 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 4 3D HN(CO)CA 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 5 3D HNCACB 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 11 3D CBCA(CO)NH 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 10 3D HNCO 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 9 3D HN(CA)CO 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 8 3D HCCH-TOCSY 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 14 2D 1H-1H TOCSY 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 13 2D 1H-1H NOESY 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600 12 2D DQF-COSY 0.2 mM [U-13C; U-15N] Ruminococcin C1, 10 mM sodium phosphate 90% H2O/10% D2O 10 mM 6.8 1 bar 300 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600 2 Bruker AVANCE III 600
NMR Refinement Method Details Software torsion angle dynamics steps : 60000 CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 3 collection TopSpin Bruker Biospin 6 processing TopSpin Bruker Biospin 2 chemical shift assignment CcpNmr Analysis CCPN 4 peak picking CcpNmr Analysis CCPN 1 structure calculation CYANA 2.1 Guntert P. 5 refinement CYANA Guntert, Mumenthaler and Wuthrich