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Prominent members of the human gut microbiota express endo-acting O-glycanases to initiate mucin breakdown
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 1 M lithuim chloride, 1 M sodium citrate pH 4.0 and 20% PEG 6000
Crystal Properties Matthews coefficient Solvent content 4.24 70.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 156.62 α = 90 b = 156.62 β = 90 c = 197.051 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9796 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 197.05 100 0.992 5.1 21.2 22156
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.56 0.679 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.3 135.637 22092 1097 99.937 0.202 0.1991 0.2017 0.2533 0.254 61.144
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.885 -0.443 -0.885 2.871
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.03 r_dihedral_angle_4_deg 22.423 r_dihedral_angle_3_deg 21.347 r_dihedral_angle_1_deg 11.151 r_lrange_it 4.792 r_lrange_other 4.792 r_mcangle_it 2.794 r_mcangle_other 2.794 r_scangle_other 2.777 r_scangle_it 2.775
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.03 r_dihedral_angle_4_deg 22.423 r_dihedral_angle_3_deg 21.347 r_dihedral_angle_1_deg 11.151 r_lrange_it 4.792 r_lrange_other 4.792 r_mcangle_it 2.794 r_mcangle_other 2.794 r_scangle_other 2.777 r_scangle_it 2.775 r_angle_refined_deg 2.026 r_scbond_it 1.666 r_scbond_other 1.66 r_mcbond_it 1.643 r_mcbond_other 1.643 r_angle_other_deg 1.273 r_nbd_refined 0.24 r_nbd_other 0.224 r_symmetry_nbd_refined 0.223 r_symmetry_nbd_other 0.208 r_nbtor_refined 0.192 r_xyhbond_nbd_refined 0.17 r_symmetry_xyhbond_nbd_refined 0.155 r_symmetry_nbtor_other 0.088 r_chiral_restr 0.076 r_symmetry_xyhbond_nbd_other 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5811 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 111
Software Software Software Name Purpose REFMAC refinement GDA data collection Aimless data scaling PHASER phasing Coot model building DIALS data reduction