☰ Navigation Tabs
3C-like protease from Southampton norovirus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IPH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 0.2 M ammonium citrate, 12% (v/v) PEG3350.
Crystal Properties Matthews coefficient Solvent content 2.41 48.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.133 α = 90 b = 89.359 β = 96.48 c = 61.581 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92819 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 41.29 99.9 0.044 0.048 0.018 1 13.6 6.6 83130
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.33 99.9 1.396 1.525 0.606 0.553 1.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1iph 1.3 41.29 78439 4216 99.28 0.1534 0.1508 0.1509 0.2007 0.201 RANDOM 25.55
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.04 -0.24 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.182 r_dihedral_angle_4_deg 18.553 r_dihedral_angle_3_deg 14.048 r_dihedral_angle_1_deg 7.744 r_rigid_bond_restr 5.203 r_angle_refined_deg 1.882 r_angle_other_deg 1.407 r_chiral_restr 0.099 r_bond_refined_d 0.015 r_gen_planes_refined 0.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.182 r_dihedral_angle_4_deg 18.553 r_dihedral_angle_3_deg 14.048 r_dihedral_angle_1_deg 7.744 r_rigid_bond_restr 5.203 r_angle_refined_deg 1.882 r_angle_other_deg 1.407 r_chiral_restr 0.099 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2516 Nucleic Acid Atoms Solvent Atoms 380 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction Aimless data scaling MOLREP phasing