6SX3
Intercalation of heterocyclic ligand between quartets in G-rich tetrahelical structure
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.35 mM VK2, 100 mM LiCl | 90% H2O/10% D2O | 100 mM | 6.0 | 1 atm | 273 | Agilent ASC Agilent Technologies Superconducting Magnet 600 |
2 | 2D 1H-1H NOESY | 0.35 mM VK2, 100 mM LiCl | 90% H2O/10% D2O | 100 mM | 6.0 | 1 atm | 273 | Agilent Oxford Superconducting Magnet 800 |
3 | 2D 1H-13C HSQC aromatic | 0.35 mM VK2, 100 mM LiCl | 90% H2O/10% D2O | 100 mM | 6.0 | 1 atm | 273 | Agilent ASC Agilent Technologies Superconducting Magnet 600 |
4 | 2D 1H-15N HSQC | 0.35 mM 10% Residue-specific labrelling VK2, 100 mM LiCl | 90% H2O/10% D2O | 100 mM | 6.0 | 1 atm | 273 | Agilent ASC Agilent Technologies Superconducting Magnet 600 |
5 | 2D 1H-15N HSQC | 0.35 mM 10% Residue-specific labrelling VK2, 100 mM LiCl | 90% H2O/10% D2O | 100 mM | 6.0 | 1 atm | 273 | Agilent Oxford Superconducting Magnet 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Agilent | ASC Agilent Technologies Superconducting Magnet | 600 |
2 | Agilent | Oxford Superconducting Magnet | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Amber | |
simulated annealing | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VNMR | Varian | |
2 | processing | VNMR | Varian | |
3 | chemical shift assignment | VNMR | Varian | |
5 | data analysis | Sparky | Goddard | |
6 | structure calculation | Amber | 18 | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |
7 | refinement | Amber | 18 | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |