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Mutations in SsgB correlate to longitudinal cell division during sporulation of Streptomyces coelicolor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6SLC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 291 0.2 M Potassium sodium tartrate, 0.1 M Bis-tris prop (pH 7.5), 20% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.23 44.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.933 α = 90 b = 93.219 β = 90 c = 96.241 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.975 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.56 67.9 99.6 0.446 0.466 0.134 0.991 4.8 12.1 20149
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.56 2.61 91.6 3.642 3.894 1.344 0.56 1.1 8.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6SLC 3.2 48.167 10524 550 99.744 0.239 0.2365 0.2386 0.2935 0.2934 40.295
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.65 9.239 -5.588
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.316 r_dihedral_angle_4_deg 15.122 r_dihedral_angle_3_deg 13.451 r_lrange_it 10.023 r_lrange_other 10.023 r_dihedral_angle_1_deg 7.658 r_scangle_it 5.09 r_scangle_other 5.089 r_mcangle_other 4.993 r_mcangle_it 4.992
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.316 r_dihedral_angle_4_deg 15.122 r_dihedral_angle_3_deg 13.451 r_lrange_it 10.023 r_lrange_other 10.023 r_dihedral_angle_1_deg 7.658 r_scangle_it 5.09 r_scangle_other 5.089 r_mcangle_other 4.993 r_mcangle_it 4.992 r_scbond_it 3.029 r_scbond_other 3.029 r_mcbond_it 2.886 r_mcbond_other 2.874 r_angle_refined_deg 1.467 r_angle_other_deg 1.219 r_symmetry_xyhbond_nbd_other 0.484 r_symmetry_xyhbond_nbd_refined 0.292 r_symmetry_nbd_refined 0.268 r_nbd_other 0.244 r_xyhbond_nbd_refined 0.21 r_nbd_refined 0.2 r_symmetry_nbd_other 0.197 r_xyhbond_nbd_other 0.168 r_ncsr_local_group_2 0.163 r_nbtor_refined 0.149 r_ncsr_local_group_3 0.148 r_ncsr_local_group_4 0.145 r_ncsr_local_group_5 0.136 r_ncsr_local_group_1 0.131 r_ncsr_local_group_6 0.118 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.068 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3866 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing